Compiling Rosetta 3.3 on Linux Mint

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- September 1, 2011 at 11:05 pm #1018
  Anonymous
  I’m relatively new to programming, and this is the first time I’m learning a new software on my own so please bear with the possibly stupid question.
  I’m having trouble reformatting my protein. All I have typed so far, just to check that I’m doing it right is: ./ligand_rpkmin.linuxgccrelease
  
  and my error message is: bash: ./ligand_rpkmin.linuxgccrelease: No such file or directory
  
  I’m in the correct directory, scons is installed, and I see the file ligand_rpkmin.cc…
  So I tried to instead run: gcc ligand_rpkmin.cc
  but it gave me the message: ligand_rpkmin.cc:16:29: fatal error: protocols/init.hh: No such file or directory
  compilation terminated.
  
  But init.hh does exist in the protocols folder.
  
  What am I doing wrong?
  Thanks in advance!
- September 1, 2011 at 11:28 pm #6009
  Anonymous
  You’re correct that you need to compile it first, but the way to do that is to go to the rosetta/rosetta_source directory, and execute “scons bin mode=release” (See: http://www.rosettacommons.org/manuals/archive/rosetta3.3_user_guide/build.html)
  
  This should build all the Rosetta programs and install (links to) them in the rosetta/rosetta_source/bin directory.
  
  By the way, the documentation for ligand_rpkmin is found at http://www.rosettacommons.org/manuals/archive/rosetta3.3_user_guide/app_ligand_dock.html
- September 1, 2011 at 11:35 pm #6010
  Anonymous
  Thank you so much!!! You are amazing. It’s executing right now, and I’m reading up on the documentation as well.
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