Fragment File Reading problem

Member Site › Forums › PyRosetta › PyRosetta – General › Fragment File Reading problem

Viewing 1 reply thread
  • Author
    Posts
    • June 12, 2012 at 8:42 pm #1305
      Anonymous

        Hi,
        I am trying to use the fragment file generated in the Robetta we site, to build a model for my protein. I am following the instructions in the tutorial, and I checekd that the file I am using sees just like the one used on the tutorial (test_in3_fragments). So everything seems ok. However, pyrosetta is not able to read my fragment file, I guess, since it comes out a reading “line too short, unable to read fragment”….all lines like that, and in the end it says “o fragments read”. I try anyhow to generate a pdb and it comes out something that seems good, but when I try to visualize is a mess of atoms.
        What can be wrong? I am just following basic instructions…
        Thanks,
        Nuria

      • June 24, 2012 at 9:09 pm #7299
        Anonymous

          Your original question says you’ve checked all the obvious things, mostly making sure that your Robetta fragments match the regular fragment file format. Does test_in3_fragments, or whatever code you are using, correctly load the sample fragment file you are comparing to?

      • Author
        Posts
      Viewing 1 reply thread
      • You must be logged in to reply to this topic.