Member Site › Forums › Rosetta 3 › Rosetta 3 – Build/Install › empty dir rosetta_source/src/apps/pilot
- This topic has 5 replies, 3 voices, and was last updated 12 years, 2 months ago by
attesor.
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June 14, 2012 at 3:28 pm #1308
Anonymous
I run Rosetta 3.4 on Ubuntu 12.04 64bit. I could no find program remodel after installing v3.4.
The document of remodel point the source code to dir rosetta/rosetta_source/src/apps/pilot/possu/remodel.cc (see user guide: http://www.rosettacommons.org/manuals/archive/rosetta3.4_user_guide/d1/d8c/remodel.html ). But the dir rosetta_source/src/apps/pilot is empty in my installation dir (I looked for the file remodel.cc in the rosetta dir and could not find it). I double-checked my download rosetta3.4_bundles.tgz (1,677,896,491 bytes and md5sum is correct) and found the dir is also empty in the .tgz file. Then I checked the source file rosetta3.4_source.tgz and did not find remodel.cc, either. Should I download another file or version? -
June 14, 2012 at 3:57 pm #7251
Anonymous
No, your version is fine. We strip pilot from the release. Remodel should be in with the public apps.
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June 14, 2012 at 9:58 pm #7257
Anonymous
I talked with Possu, and he recommends using it through the RosettaScripts interface. (It’s exposed through an unsurprisingly-named RemodelMover mover.) As you’ve found, it’s just the stand-alone executable which was not included in the release.
I’ve attached an example script he forwarded to me (see the top for some comments).
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June 15, 2012 at 7:33 am #7258
attesor
Thank you all for checking this out! I guess I just got extra motivation to learn RosettaScript. Cheers!
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June 14, 2012 at 4:10 pm #7252
attesor
right, the remodel dir is present at rosettta_source/src/protocols/forge/remodel/. But remodel.cc is not available anywhere and remodel executable is not present in rosetta_source/bin after installation. Did I use the wrong parameters when installing my rosetta? I built my version using “scons bin mode=release”
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June 14, 2012 at 6:41 pm #7254
Anonymous
Sorry, I posted without checking (in my defense, I wasn’t at my desk). Remodel’s author didn’t get it ready in time for the 3.4 release; I guess you’ll have to wait for 3.5 (or try contacting them directly). It’s not in 3.4.
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