Member Site › Forums › PyRosetta › PyRosetta – General › Missing movers in OSX PyRosetta
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Anonymous.
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November 16, 2012 at 11:45 pm #1466
Anonymous
The RigidBodyMovers are missing in the OSX build of PyRosetta.
Examples:
On Ubuntu:
In [3]: help(RigidBody
RigidBodyDofPerturbMover RigidBodyMover
RigidBodyDofRandomizeMover RigidBodyPerturbMover
RigidBodyDofRandomTransMover RigidBodyPerturbMover
RigidBodyDofSeqPerturbMover RigidBodyRandomizeMover
RigidBodyDofSeqRandomizeMover RigidBodySpinMover
RigidBodyDofSeqTransMover RigidBodyTransMover
RigidBodyDofTransMover
On OSX:
In [3]: help(RigidBody
RigidBodyInfo RigidBodyInfoAP RigidBodyInfoCAP
In [3]: rbm = RigidBodyMover()
NameError Traceback (most recent call last)
NameError: name 'RigidBodyMover' is not defined
I have tried the following PyRosetta builds on OSX:
PyRosetta.MacOSX.Lion-r46035.64Bit
PyRosetta.MacOSX.Lion-r50085.64Bit
PyRosetta.MacOSX.Lion-r52031.64Bit
PyRosetta.MacOSX.Lion-r52067.64Bit
PyRosetta.MacOSX.Lion-r52108.64BitNone appear to have RigidBodyMovers
I’m trying now to build PyRosetta myself.
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November 19, 2012 at 7:51 pm #8114
Anonymous
You do not need to build custom version of PyRosetta to get basic movers – they all, and 99% of other Rosetta objects included in binaries that we provide. Have you imported the rigid namespace? Here what you need to do (example of iPython session from one of the recent builds):
In [3]: import rosettaIn [4]: import rosetta.protocols.rigid
In [5]: rosetta.init()
Found rosetta_database at PyRosetta/src/python/bindings/rosetta_database; using it....
PyRosetta 2.012 [Rosetta-3.4.r52107M] retrieved from: https://svn.rosettacommons.org/source/trunk/rosetta/rosetta_source
(C) Copyright Rosetta Commons Member Institutions.
Created in JHU by Sergey Lyskov and PyRosetta Team.core.init: Mini-Rosetta version 52107M from https://svn.rosettacommons.org/source/trunk/rosetta/rosetta_source
core.init: command: app -database PyRosetta/src/python/bindings/rosetta_database -ex1 -ex2aro
core.init: 'RNG device' seed mode, using '/dev/urandom', seed=-605003746 seed_offset=0 real_seed=-605003746
core.init.random: RandomGenerator:init: Normal mode, seed=-605003746 RG_type=mt19937In [6]: rosetta.protocols.rigid.R hit-tab-key-here
rosetta.protocols.rigid.RigidBodyDeterministicSpinMover rosetta.protocols.rigid.RigidBodyDeterministicSpinMoverAP
rosetta.protocols.rigid.RigidBodyDeterministicSpinMoverCAP rosetta.protocols.rigid.RigidBodyDofPerturbMover
rosetta.protocols.rigid.RigidBodyDofPerturbMoverAP rosetta.protocols.rigid.RigidBodyDofPerturbMoverCAP
rosetta.protocols.rigid.RigidBodyDofRandomizeMover rosetta.protocols.rigid.RigidBodyDofRandomizeMoverAP
rosetta.protocols.rigid.RigidBodyDofRandomizeMoverCAP rosetta.protocols.rigid.RigidBodyDofRandomTransMover
rosetta.protocols.rigid.RigidBodyDofRandomTransMoverAP rosetta.protocols.rigid.RigidBodyDofRandomTransMoverCAP
rosetta.protocols.rigid.RigidBodyDofSeqPerturbMover rosetta.protocols.rigid.RigidBodyDofSeqPerturbMoverAP
rosetta.protocols.rigid.RigidBodyDofSeqPerturbMoverCAP rosetta.protocols.rigid.RigidBodyDofSeqRandomizeMover
rosetta.protocols.rigid.RigidBodyDofSeqRandomizeMoverAP rosetta.protocols.rigid.RigidBodyDofSeqRandomizeMoverCAP
rosetta.protocols.rigid.RigidBodyDofSeqTransMover rosetta.protocols.rigid.RigidBodyDofSeqTransMoverAP
rosetta.protocols.rigid.RigidBodyDofSeqTransMoverCAP rosetta.protocols.rigid.RigidBodyDofTransMover
rosetta.protocols.rigid.RigidBodyDofTransMoverAP rosetta.protocols.rigid.RigidBodyDofTransMoverCAP
rosetta.protocols.rigid.RigidBodyMotionMover rosetta.protocols.rigid.RigidBodyMotionMoverAP
rosetta.protocols.rigid.RigidBodyMotionMoverCAP rosetta.protocols.rigid.RigidBodyMover
rosetta.protocols.rigid.RigidBodyMoverAP rosetta.protocols.rigid.RigidBodyMoverCAP
rosetta.protocols.rigid.RigidBodyPerturbMover rosetta.protocols.rigid.RigidBodyPerturbMoverAP
rosetta.protocols.rigid.RigidBodyPerturbMoverCAP rosetta.protocols.rigid.RigidBodyPerturbNoCenterMover
rosetta.protocols.rigid.RigidBodyPerturbNoCenterMoverAP rosetta.protocols.rigid.RigidBodyPerturbNoCenterMoverCAP
rosetta.protocols.rigid.RigidBodyPerturbNoCenterMoverCreator rosetta.protocols.rigid.RigidBodyPerturbNoCenterMoverCreatorAP
rosetta.protocols.rigid.RigidBodyPerturbNoCenterMoverCreatorCAP rosetta.protocols.rigid.RigidBodyRandomizeMover
rosetta.protocols.rigid.RigidBodyRandomizeMoverAP rosetta.protocols.rigid.RigidBodyRandomizeMoverCAP
rosetta.protocols.rigid.RigidBodySpinMover rosetta.protocols.rigid.RigidBodySpinMoverAP
rosetta.protocols.rigid.RigidBodySpinMoverCAP rosetta.protocols.rigid.RigidBodyTransMover
rosetta.protocols.rigid.RigidBodyTransMoverAP rosetta.protocols.rigid.RigidBodyTransMoverCAP
rosetta.protocols.rigid.RollMover rosetta.protocols.rigid.RollMoverAP
rosetta.protocols.rigid.RollMoverCAP rosetta.protocols.rigid.RollMoverCreator
rosetta.protocols.rigid.RollMoverCreatorAP rosetta.protocols.rigid.RollMoverCreatorCAP
rosetta.protocols.rigid.RotateJumpAxisMover rosetta.protocols.rigid.RotateJumpAxisMoverAP
rosetta.protocols.rigid.RotateJumpAxisMoverCAPIn [6]: rosetta.protocols.rigid.RigidBodyMover()
Out[6]:
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December 5, 2012 at 12:34 am #8167
Anonymous
Yes importing the namespace works. Thank you.
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