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I am following the protein/protein Ddg demo:
https://www.rosettacommons.org/demos/latest/public/calculate_protein_protein_ddg/README
I am wondering if there is a way to modify the script mutation_script.xml so that I can write the predicted structures of the mutants to PDB files?
As I read things, the predicted mutant structures should already be written out to files in the “output_files” directory. (The location of this should be controlled by the “-out:path:pdb ../output_files” option.)