Error during docking with proteins containing norleucine

Member Site › Forums › Rosetta 3 › Rosetta 3 – General › Error during docking with proteins containing norleucine

Viewing 1 reply thread
  • Author
    Posts
    • April 25, 2016 at 10:04 pm #2415
      Anonymous

        Hi all
        The docking of proteins containing norleucine fails with the following error.

        can not find a residue type that matches the residue NLU at position 181
        can not find a residue type that matches the residue NLU at position 181

        ERROR: core::util::switch_to_residue_type_set fails

        Is the error related to not being able to find a centroid l-ncaa params file for norleucine?

        Would copying centroid MET.params into NLU.params and indicating its location in residue_types.txt work?

        Thanks

      • April 28, 2016 at 9:47 pm #11536
        Anonymous

          You’re correct that the error is due to not having a centroid norleucine params file. 

          Stealling the centroid MET.params and convering it to a NLU.params file is an excellent idea for a workaround, and should work.

      • Author
        Posts
      Viewing 1 reply thread
      • You must be logged in to reply to this topic.