Collecting all decoys from batch files

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    • August 7, 2016 at 7:23 pm #2483
      Anonymous

        Greetings.

        For anyone who’s used the RASREC-based protocols in Rosetta, I’m wondering if you know of any script or straightforward way to collect the decoys generated across all batch files. I’d like to be able to plot all decoys on an energy-rms plot. I know Rosetta reuses decoy tags, so I’m not sure how to go about it. I’ve looked into the cluster application, but I’d like to use the centroid and/or full-atom scores for direct manual plotting as well.

        Any advice would be much appreciated.

        Cheers.

      • August 13, 2016 at 7:21 pm #11791
        Anonymous

          Are you getting the decoys in silent file form or PDB form?  combine_silent will renumber them.  

          I’m sure someone wrote the tool you described but never bothered publishing/publicizing it; the Rosetta software stack is often missing those accessories.  It might be in the tools repository, which should come with the release.

        • August 13, 2016 at 8:03 pm #11792
          Anonymous

            Yes, thank you! combine_silent is not compiled in my release, but at least I found the uncompiled script. Thanks so much for the tip! 

            This was helfpul as well: https://www.rosettacommons.org/manuals/rosetta3_user_guide/file_map.html

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