Error of non standard amino acid (SnugDock)

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    • March 2, 2017 at 3:51 am #2603
      Anonymous

        Hi

        I am trying to do a docking with an antibody molecule and its partner protein. As far as I can see, the amino acid residues are perfectly fine. Yet when I try submitting it, I am getting an error about non-standard AA. Please find attached the screenshot of the error message.

        Kindly help me get through this problem.

        Thanks

        Suchetana

         

        I am also attaching the input file (though this is not the complete file. I am unable to upload the complete file for size issues. Please suggest a workaround)

      • March 6, 2017 at 5:13 pm #12194
        Anonymous

          It’s not an issue with the portions of the file you extracted. The cut-down file submits to ROSIE SnugDock without a problem: http://rosie.rosettacommons.org/snug_dock/viewjob/30251

          Could you host the full PDB file somewhere else (e.g. like Google Drive or DropBox), and then post a link to that here? That should get around the forum file size restriction.

        • March 6, 2017 at 5:13 pm #12715
          Anonymous

            It’s not an issue with the portions of the file you extracted. The cut-down file submits to ROSIE SnugDock without a problem: http://rosie.rosettacommons.org/snug_dock/viewjob/30251

            Could you host the full PDB file somewhere else (e.g. like Google Drive or DropBox), and then post a link to that here? That should get around the forum file size restriction.

          • March 6, 2017 at 5:13 pm #13236
            Anonymous

              It’s not an issue with the portions of the file you extracted. The cut-down file submits to ROSIE SnugDock without a problem: http://rosie.rosettacommons.org/snug_dock/viewjob/30251

              Could you host the full PDB file somewhere else (e.g. like Google Drive or DropBox), and then post a link to that here? That should get around the forum file size restriction.

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