compilation rosetta in ubuntu 16.04, please help

This topic has 2 replies, 2 voices, and was last updated 6 years, 11 months ago by Anonymous.

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- October 16, 2017 at 3:21 am #2762
  Anonymous
  Anyone use unbuntu 16.04?
  
  I installed gcc-6 , g++6, scons-2.51. all install correctly. as I checked — version all correct.
  
  option1, when I compile the Roseta source code ( Version 3.
  
  $ ./scons.py -j 4 mode=release bin
  
  The program runs long time. but at the last I got
  
  usr/bin/ld: cannot find -lz
  
  collect2: error: ld returned 1 exit status
  
  scons: *** [build/src/release/linux/4.4/64/x86/gcc/6.3/default/libObjexxFCL.so] Error 1
  
  scons: building terminated because of errors.
  
  I use option 2 and downloaded Rosetta Linux binary version
  
  $ antibody.static.linuxgccrelease -fasta 1a2y_antibody.fasta | tee grafting.log
  
  I got :
  
  [ERROR] EXCN_utility_exit has been thrown from: src/protocols/antibody/grafting/regex_based_cdr_detection.cc line: 75
  
  ERROR: ERROR: Your compiler does not have full support for C++11 regex, and therefore can’t support RegEx_based_CDR_Detector/antibody grafting.
  
  Please help
- October 16, 2017 at 4:31 pm #13811
  Anonymous
  You need to install the zlib development package. For Ubuntu the command is something like `sudo apt-get install zlib1g-dev` (https://www.rosettacommons.org/docs/latest/build_documentation/Build-Documentation#setting-up-rosetta-3_dependencies-troubleshooting)
- October 17, 2017 at 4:06 am #13817
  Anonymous
  Thanks
  
  I installed : `sudo apt-get install zlib1g-dev`
  
  I type again : $ ./scons.py -j 4 mode=release bin get clang error
  
  however,
  
  $ ./scons.py -j 4 mode=release bin cxx=clang
  
  compliation seems works!
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