PyRosetta compiled with GLIBC 2.12

Member Site › Forums › PyRosetta › PyRosetta – Build/Install › PyRosetta compiled with GLIBC 2.12

Viewing 1 reply thread
  • Author
    Posts
    • March 13, 2018 at 10:02 pm #2870
      Anonymous

        Hello,

        We are trying to install PyRosetta on CentOS 6.  The current compilation of PyRosetta (PyRosetta4.Release.python27.linux.release-171.tar.bz2) requires GLIBC_2.14.

        However, our system’s GLIBC version is 2.12 and the compilation of PyRosetta stop with the error

                                  ImportError: /lib64/libc.so.6: version `GLIBC_2.14′ not found (required by /cm/shared/apps/pyrosetta/python/2.7/4.171/lib/python2.7/site-packages/pyrosetta-2018.9+release.333d996-py2.7-linux-x86_64.egg/pyrosetta/rosetta.so)

        Would it be possible to get a compilation of PyRosetta with GLIBC 2.12?

      • March 13, 2018 at 11:58 pm #14122
        Anonymous

          It should be possible to install PyRosetta on that system but you will need to build it from Rosetta source. Please see http://www.pyrosetta.org/documentation#TOC-Building-PyRosetta-from-source for instructions how to do that.

          • March 14, 2018 at 10:35 pm #14124
            Anonymous

              We have tried to build it from Rosetta source, but we got errors in “Generating bindings”, please see attached files for errors.

            • March 31, 2018 at 6:59 pm #14167
              Anonymous

                You’ll need a C++11 compatible compiler in order to compile recent PyRosettas.  This is either Clang 3.3 or later or GCC 4.8 or later. If your current compiler is earlier than that, you may need to install an updated compiler. (It should be possible to install a compiler alongside the default compiler and use it instead of the default.)

          • Author
            Posts
          Viewing 1 reply thread
          • You must be logged in to reply to this topic.