FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py

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    • #2895
      Anonymous

        Dears,

        After installing Rosetta 3.9 in a cluster and trying to run the simple command:

        helix_preassemble_setup.py -fasta NFKB_1OOA_RNAStructure_2D.fasta -secstruct NFKB_1OOA_RNAStructure.secstruct

        we get the following error:

        (((((….((((….))))…)))))

        Traceback (most recent call last):

          File “/mnt/beegfs/software/rosetta/3.9/tools/rna_tools/bin/rna_denovo_setup.py”, line 64, in <module>

            obligate_pair = zip( obligate_pair_res_chain[0],obligate_pair_res_chain[1] )

        IndexError: list index out of range

        Traceback (most recent call last):

          File “/mnt/beegfs/software/rosetta/3.9/tools/rna_tools/bin/helix_preassemble_setup.py”, line 112, in <module>

            subprocess.check_call([str(elem) for elem in cmdline.split()])

          File “/usr/lib64/python2.7/subprocess.py”, line 542, in check_call

            raise CalledProcessError(retcode, cmd)

        subprocess.CalledProcessError: Command ” returned non-zero exit status 1

        Is there anything wrong with the installation? The input files are OK because we used them two years  ago.

        Could it be something related to the installation of RNA_tools ?

        Thanks a lot and best regards

        Obdulia Rabal

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