Member Site › Forums › Rosetta 3 › Rosetta 3 – General › Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
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October 12, 2018 at 7:55 am #3019
Anonymous
Dear Rosetta Team,
I am trying to run enzyme design protocol on protein model with 2 Iron ions, 2 Ions, 1 molecule and 1 water molecule (!). Problem is it is getting core dump/segmentation fault each time I run it. After various code recompilations and printing the error I came came to know the error is at “EnzdesBaseProtocol::enzdes_pack(” in EnzdesBaseProtocol.cc.
code:
void
EnzdesBaseProtocol::enzdes_pack(
core::pose::Pose & pose,
core::pack::task::PackerTaskCOP task,
core::scoring::ScoreFunctionCOP scorefxn,
core::Size cycles,
bool minimize_after_packing,
bool pack_unconstrained,
bool favor_native
) const
{
tr.Info << "[DA] passed line enzdes_pack [485]" << std::endl;
if ( pack_unconstrained ) remove_enzdes_constraints( pose, true );
tr.Info << "[DA] passed line enzdes_pack [487]" << std::endl;
if ( favor_native ) {
toolbox::match_enzdes_util::get_enzdes_observer( pose )->setup_favor_native_constraints( pose, task, *(this->get_native_pose()) );
}
tr.Info << "[DA] passed line enzdes_pack [491]" << std::endl;
core::pack::task::PackerTaskCOP usetask = task;
core::scoring::ScoreFunctionCOP packsfxn;
tr.Info << "[DA] passed line enzdes_pack [494] ==Loop Started==" << std::endl;
for ( core::Size cycle = 1; cycle <= cycles; ++cycle ) {
tr.Info << "[DA] passed line enzdes_pack [496] Loop = "<< cycle << std::endl;
//soft_rep we'll only do this if the task is to be designed and not the last cycle,
//because we really don't want any clashes
bool soft_rep ( basic::options::option[basic::options::OptionKeys::packing::soft_rep_design] && usetask->design_any() && (cycle < cycles ) );
if ( soft_rep ) packsfxn = soft_scorefxn_;
else packsfxn = scorefxn;
protocols::minimization_packing::PackRotamersMoverOP enzdes_pack( new protocols::minimization_packing::PackRotamersMover(packsfxn, usetask) );
tr.Info << "[DA] passed line enzdes_pack [504] Loop = "<< cycle << std::endl;
tr.Info << "[DA] passed line enzdes_pack [504*] "<< pose <<" Loop = "<< cycle << std::endl;
//pose.dump_pdb("tmp.pdb");
enzdes_pack->apply(pose); // <<<<<<<<<<<<<<<<<<<<<<<<<<<<This is the error point
tr.Info << "[DA] passed line enzdes_pack [506] Loop = "<< cycle << std::endl;
if ( minimize_after_packing ) cst_minimize(pose, task);
tr.Info << "[DA] passed line enzdes_pack [508] Loop = "<< cycle << std::endl;
usetask = enzutil::recreate_task( pose, *task );
tr.Info << "[DA] passed line enzdes_pack [510] Loop = "<< cycle << std::endl;
} //cycle loop
tr.Info << "[DA] passed line enzdes_pack [512] ==Loop Ended==" << std::endl;my flag:
-s Protein.pdb
-resfile DEV.resfile
-extra_res_fa In1.params Mol.params In2.params FE4.params
-in:auto_setup_metals
-enzdes
-cst_opt
-cst_design
-cstfile Required.cst
-enzdes:no_unconstrained_repack
-bb_min
-lig_packer_weight 1.8
-design_min_cycles 10
-packing:soft_rep_design
-packing:ex1
-packing:ex2
-packing:use_input_sc
-packing:linmem_ig 10
-out:file:o enz_score.out
-nblist_autoupdate
-unboundrot Protein.pdb
-nstruct 2
-nproc=20
-mute core.io.database core.scoring.NeighborList
-in:file:load_PDB_components
my Error :
protocols.enzdes.EnzdesTaskOperations: Packer Energies between ligand and design residues are upweighted by factor 1.8.
protocols.enzdes.EnzdesFixBBProtocol: starting cst_design, 10 cycles of design/minimization ...
protocols.enzdes.EnzdesFixBBProtocol: [DA] cst_design Working [112] : design_pack_task: 0x7302560
protocols.enzdes.EnzdesFixBBProtocol: [DA] cst_design Going IN [118]
protocols.enzdes.EnzdesBaseProtocol: [DA] passed line enzdes_pack [485]
protocols.enzdes.EnzdesBaseProtocol: [DA] passed line enzdes_pack [487]
protocols.enzdes.EnzdesBaseProtocol: [DA] passed line enzdes_pack [491]
protocols.enzdes.EnzdesBaseProtocol: [DA] passed line enzdes_pack [494] ==Loop Started==
protocols.enzdes.EnzdesBaseProtocol: [DA] passed line enzdes_pack [496] Loop = 1
protocols.enzdes.EnzdesBaseProtocol: [DA] passed line enzdes_pack [504] Loop = 1
protocols.enzdes.EnzdesBaseProtocol: [DA] passed line enzdes_pack [504*] PDB file name: Protein.pdb
protocols.enzdes.EnzdesBaseProtocol: Total residues:515
protocols.enzdes.EnzdesBaseProtocol: Sequence: ....wwZZZ
protocols.enzdes.EnzdesBaseProtocol: Fold tree:
protocols.enzdes.EnzdesBaseProtocol: FOLD_TREE EDGE 1 511 1 EDGE 1 512 2 EDGE 1 513 3 EDGE 1 128 -1 EDGE 128 514 4 EDGE 128 227 -1 EDGE 227 510 -1 EDGE 227 515 5 Loop = 1
*** Error in `/home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/bin/enzyme_design.default.linuxgccrelease': corrupted size vs. prev_size: 0x000000001325e0e0 ***
======= Backtrace: =========
/usr/lib64/libc.so.6(+0x7f5e4)[0x7f3369fdc5e4]
/usr/lib64/libc.so.6(+0x816db)[0x7f3369fde6db]
/home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libcore.3.so(_ZNSt6vectorIN4core7scoring4trie17RotamerDescriptorINS1_6etable5etrie10EtableAtomENS5_17CountPairData_1_1EEESaIS8_EED1Ev+0x1a2)[0x7f336ef47db2]
/home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libcore.3.so(+0x16a9ef4)[0x7f336ef2def4]
/home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libcore.3.so(+0x16adaf8)[0x7f336ef31af8]
/home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libcore.3.so(_ZNK4core7scoring6etable16BaseEtableEnergyINS1_20AnalyticEtableEnergyEE17setup_for_packingERNS_4pose4PoseERKN7utility7vector1IbSaIbEEESD_+0xc9)[0x7f336ef6a5e9]
/home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libcore.3.so(_ZNK4core7scoring13ScoreFunction17setup_for_packingERNS_4pose4PoseERKN7utility7vector1IbSaIbEEESA_+0xc0)[0x7f336e4b14b0]
/home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libcore.4.so(_ZN4core4pack19pack_rotamers_setupERNS_4pose4PoseERKNS_7scoring13ScoreFunctionESt10shared_ptrIKNS0_4task10PackerTaskEES8_INS0_11rotamer_set11RotamerSetsEERS8_INS0_17interaction_graph19AnnealableGraphBaseEE+0x74)[0x7f336ffbd6f4]
/home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols.3.so(_ZN9protocols20minimization_packing17PackRotamersMover5setupERN4core4pose4PoseE+0x121)[0x7f33724804a1]
/home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols.3.so(_ZN9protocols20minimization_packing17PackRotamersMover5applyERN4core4pose4PoseE+0x20)[0x7f33724823d0]
/home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols.7.so(_ZNK9protocols6enzdes18EnzdesBaseProtocol11enzdes_packERN4core4pose4PoseESt10shared_ptrIKNS2_4pack4task10PackerTaskEES6_IKNS2_7scoring13ScoreFunctionEEmbbb+0x3f3)[0x7f33785d7a63]
/home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols.7.so(_ZN9protocols6enzdes19EnzdesFixBBProtocol5applyERN4core4pose4PoseE+0x61b)[0x7f33785ddbcb]
/home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/bin/enzyme_design.default.linuxgccrelease[0x408063]
/usr/lib64/libc.so.6(__libc_start_main+0xf5)[0x7f3369f7f445]
/home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/bin/enzyme_design.default.linuxgccrelease[0x409410]
======= Memory map: ========
00400000-00411000 r-xp 00000000 fd:02 6444791144 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/enzyme_design.default.linuxgccrelease
00610000-00611000 r--p 00010000 fd:02 6444791144 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/enzyme_design.default.linuxgccrelease
00611000-00612000 rw-p 00011000 fd:02 6444791144 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/enzyme_design.default.linuxgccrelease
00612000-00613000 rw-p 00000000 00:00 0
02557000-1bd16000 rw-p 00000000 00:00 0 [heap]
7f3360000000-7f3360021000 rw-p 00000000 00:00 0
7f3360021000-7f3364000000 ---p 00000000 00:00 0
7f3367cc8000-7f3368556000 rw-p 00000000 00:00 0
7f3368de2000-7f3369d59000 rw-p 00000000 00:00 0
7f3369d59000-7f3369d5b000 r-xp 00000000 fd:00 67140682 /usr/lib64/libdl-2.17.so
7f3369d5b000-7f3369f5b000 ---p 00002000 fd:00 67140682 /usr/lib64/libdl-2.17.so
7f3369f5b000-7f3369f5c000 r--p 00002000 fd:00 67140682 /usr/lib64/libdl-2.17.so
7f3369f5c000-7f3369f5d000 rw-p 00003000 fd:00 67140682 /usr/lib64/libdl-2.17.so
7f3369f5d000-7f336a120000 r-xp 00000000 fd:00 67140676 /usr/lib64/libc-2.17.so
7f336a120000-7f336a31f000 ---p 001c3000 fd:00 67140676 /usr/lib64/libc-2.17.so
7f336a31f000-7f336a323000 r--p 001c2000 fd:00 67140676 /usr/lib64/libc-2.17.so
7f336a323000-7f336a325000 rw-p 001c6000 fd:00 67140676 /usr/lib64/libc-2.17.so
7f336a325000-7f336a32a000 rw-p 00000000 00:00 0
7f336a32a000-7f336a33f000 r-xp 00000000 fd:00 67140831 /usr/lib64/libgcc_s-4.8.5-20150702.so.1
7f336a33f000-7f336a53e000 ---p 00015000 fd:00 67140831 /usr/lib64/libgcc_s-4.8.5-20150702.so.1
7f336a53e000-7f336a53f000 r--p 00014000 fd:00 67140831 /usr/lib64/libgcc_s-4.8.5-20150702.so.1
7f336a53f000-7f336a540000 rw-p 00015000 fd:00 67140831 /usr/lib64/libgcc_s-4.8.5-20150702.so.1
7f336a540000-7f336a641000 r-xp 00000000 fd:00 67140684 /usr/lib64/libm-2.17.so
7f336a641000-7f336a840000 ---p 00101000 fd:00 67140684 /usr/lib64/libm-2.17.so
7f336a840000-7f336a841000 r--p 00100000 fd:00 67140684 /usr/lib64/libm-2.17.so
7f336a841000-7f336a842000 rw-p 00101000 fd:00 67140684 /usr/lib64/libm-2.17.so
7f336a842000-7f336a92b000 r-xp 00000000 fd:00 67141012 /usr/lib64/libstdc++.so.6.0.19
7f336a92b000-7f336ab2a000 ---p 000e9000 fd:00 67141012 /usr/lib64/libstdc++.so.6.0.19
7f336ab2a000-7f336ab32000 r--p 000e8000 fd:00 67141012 /usr/lib64/libstdc++.so.6.0.19
7f336ab32000-7f336ab34000 rw-p 000f0000 fd:00 67141012 /usr/lib64/libstdc++.so.6.0.19
7f336ab34000-7f336ab49000 rw-p 00000000 00:00 0
7f336ab49000-7f336ad7a000 r-xp 00000000 fd:02 4536501743 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/external/release/linux/3.10/64/x86/gcc/4.8/default/libxml2.so
7f336ad7a000-7f336af7a000 ---p 00231000 fd:02 4536501743 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/external/release/linux/3.10/64/x86/gcc/4.8/default/libxml2.so
7f336af7a000-7f336af82000 r--p 00231000 fd:02 4536501743 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/external/release/linux/3.10/64/x86/gcc/4.8/default/libxml2.so
7f336af82000-7f336af86000 rw-p 00239000 fd:02 4536501743 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/external/release/linux/3.10/64/x86/gcc/4.8/default/libxml2.so
7f336af86000-7f336af98000 rw-p 00000000 00:00 0
7f336af98000-7f336b160000 r-xp 00000000 fd:02 4536501729 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/external/release/linux/3.10/64/x86/gcc/4.8/default/libcifparse.so
7f336b160000-7f336b35f000 ---p 001c8000 fd:02 4536501729 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/external/release/linux/3.10/64/x86/gcc/4.8/default/libcifparse.so
7f336b35f000-7f336b361000 r--p 001c7000 fd:02 4536501729 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/external/release/linux/3.10/64/x86/gcc/4.8/default/libcifparse.so
7f336b361000-7f336b364000 rw-p 001c9000 fd:02 4536501729 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/external/release/linux/3.10/64/x86/gcc/4.8/default/libcifparse.so
7f336b364000-7f336b463000 r-xp 00000000 fd:02 4536501755 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/external/release/linux/3.10/64/x86/gcc/4.8/default/libsqlite3.so
7f336b463000-7f336b662000 ---p 000ff000 fd:02 4536501755 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/external/release/linux/3.10/64/x86/gcc/4.8/default/libsqlite3.so
7f336b662000-7f336b664000 r--p 000fe000 fd:02 4536501755 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/external/release/linux/3.10/64/x86/gcc/4.8/default/libsqlite3.so
7f336b664000-7f336b666000 rw-p 00100000 fd:02 4536501755 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/external/release/linux/3.10/64/x86/gcc/4.8/default/libsqlite3.so
7f336b666000-7f336b667000 rw-p 00000000 00:00 0
7f336b667000-7f336b6a6000 r-xp 00000000 fd:02 4536501756 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/external/release/linux/3.10/64/x86/gcc/4.8/default/libcppdb.so
7f336b6a6000-7f336b8a6000 ---p 0003f000 fd:02 4536501756 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/external/release/linux/3.10/64/x86/gcc/4.8/default/libcppdb.so
7f336b8a6000-7f336b8a7000 r--p 0003f000 fd:02 4536501756 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/external/release/linux/3.10/64/x86/gcc/4.8/default/libcppdb.so
7f336b8a7000-7f336b8a8000 rw-p 00040000 fd:02 4536501756 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/external/release/linux/3.10/64/x86/gcc/4.8/default/libcppdb.so
7f336b8a8000-7f336b8bd000 r-xp 00000000 fd:00 67140833 /usr/lib64/libz.so.1.2.7
7f336b8bd000-7f336babc000 ---p 00015000 fd:00 67140833 /usr/lib64/libz.so.1.2.7
7f336babc000-7f336babd000 r--p 00014000 fd:00 67140833 /usr/lib64/libz.so.1.2.7
7f336babd000-7f336babe000 rw-p 00015000 fd:00 67140833 /usr/lib64/libz.so.1.2.7
7f336babe000-7f336bb01000 r-xp 00000000 fd:02 6444023422 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libObjexxFCL.so
7f336bb01000-7f336bd01000 ---p 00043000 fd:02 6444023422 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libObjexxFCL.so
7f336bd01000-7f336bd02000 r--p 00043000 fd:02 6444023422 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libObjexxFCL.so
7f336bd02000-7f336bd03000 rw-p 00044000 fd:02 6444023422 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libObjexxFCL.so
7f336bd03000-7f336c02f000 r-xp 00000000 fd:02 6444133458 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libutility.so
7f336c02f000-7f336c22e000 ---p 0032c000 fd:02 6444133458 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libutility.so
7f336c22e000-7f336c23b000 r--p 0032b000 fd:02 6444133458 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libutility.so
7f336c23b000-7f336c23e000 rw-p 00338000 fd:02 6444133458 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libutility.so
7f336c23e000-7f336c23f000 rw-p 00000000 00:00 0
7f336c23f000-7f336c48a000 r-xp 00000000 fd:02 6444133459 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libnumeric.so
7f336c48a000-7f336c689000 ---p 0024b000 fd:02 6444133459 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libnumeric.so
7f336c689000-7f336c691000 r--p 0024a000 fd:02 6444133459 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libnumeric.so
7f336c691000-7f336c693000 rw-p 00252000 fd:02 6444133459 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libnumeric.so
7f336c693000-7f336cb11000 r-xp 00000000 fd:02 6444133460 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libbasic.so
7f336cb11000-7f336cd10000 ---p 0047e000 fd:02 6444133460 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libbasic.so
7f336cd10000-7f336cd24000 r--p 0047d000 fd:02 6444133460 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libbasic.so
7f336cd24000-7f336cd26000 rw-p 00491000 fd:02 6444133460 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libbasic.so
7f336cd26000-7f336cd69000 rw-p 00000000 00:00 0
7f336cd69000-7f336cd6a000 r-xp 00000000 fd:02 6444133461 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libcore.1.so
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7f3377374000-7f3377400000 r-xp 00000000 fd:02 6442493813 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols_c.6.so
7f3377400000-7f3377600000 ---p 0008c000 fd:02 6442493813 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols_c.6.so
7f3377600000-7f3377604000 r--p 0008c000 fd:02 6442493813 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols_c.6.so
7f3377604000-7f3377605000 rw-p 00090000 fd:02 6442493813 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols_c.6.so
7f3377605000-7f3377606000 rw-p 00000000 00:00 0
7f3377606000-7f3377cf7000 r-xp 00000000 fd:02 6442493812 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols_d.6.so
7f3377cf7000-7f3377ef7000 ---p 006f1000 fd:02 6442493812 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols_d.6.so
7f3377ef7000-7f3377f14000 r--p 006f1000 fd:02 6442493812 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols_d.6.so
7f3377f14000-7f3377f1c000 rw-p 0070e000 fd:02 6442493812 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols_d.6.so
7f3377f1c000-7f3377f28000 rw-p 00000000 00:00 0
7f3377f28000-7f3378048000 r-xp 00000000 fd:02 6442493811 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols_e.6.so
7f3378048000-7f3378248000 ---p 00120000 fd:02 6442493811 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols_e.6.so
7f3378248000-7f337824f000 r--p 00120000 fd:02 6442493811 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols_e.6.so
7f337824f000-7f3378251000 rw-p 00127000 fd:02 6442493811 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols_e.6.so
7f3378251000-7f3378252000 rw-p 00000000 00:00 0
7f3378252000-7f3379017000 r-xp 00000000 fd:02 6442647557 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols.7.so
7f3379017000-7f3379216000 ---p 00dc5000 fd:02 6442647557 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols.7.so
7f3379216000-7f3379249000 r--p 00dc4000 fd:02 6442647557 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols.7.so
7f3379249000-7f3379257000 rw-p 00df7000 fd:02 6442647557 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols.7.so
7f3379257000-7f3379266000 rw-p 00000000 00:00 0
7f3379266000-7f3379502000 r-xp 00000000 fd:02 6442647558 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols.8.so
7f3379502000-7f3379701000 ---p 0029c000 fd:02 6442647558 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols.8.so
7f3379701000-7f337971c000 r--p 0029b000 fd:02 6442647558 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols.8.so
7f337971c000-7f337971f000 rw-p 002b6000 fd:02 6442647558 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libprotocols.8.so
7f337971f000-7f3379720000 rw-p 00000000 00:00 0
7f3379720000-7f3379721000 r-xp 00000000 fd:02 6442493814 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libdevel.so
7f3379721000-7f3379920000 ---p 00001000 fd:02 6442493814 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libdevel.so
7f3379920000-7f3379921000 r--p 00000000 fd:02 6442493814 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libdevel.so
7f3379921000-7f3379922000 rw-p 00001000 fd:02 6442493814 /home/ddas2018/Software/RosettaCommons/rosetta_bin_linux_2018.09.60072_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/libdevel.so
7f3379922000-7f3379944000 r-xp 00000000 fd:00 67140669 /usr/lib64/ld-2.17.so
7f337997b000-7f33799f7000 rw-p 00000000 00:00 0
7f3379a1a000-7f3379b43000 rw-p 00000000 00:00 0
7f3379b43000-7f3379b44000 r--p 00021000 fd:00 67140669 /usr/lib64/ld-2.17.so
7f3379b44000-7f3379b45000 rw-p 00022000 fd:00 67140669 /usr/lib64/ld-2.17.so
7f3379b45000-7f3379b46000 rw-p 00000000 00:00 0
7ffd1741d000-7ffd1748f000 rw-p 00000000 00:00 0 [stack]
7ffd17599000-7ffd1759b000 r-xp 00000000 00:00 0 [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]
Aborted (core dumped)
Please Help!
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January 14, 2020 at 1:19 am #15110
Hellow, I see you use the FE4.params in your work, but in the database only have FE2+ and FE3+. I am interested in how you make your FE4+. Can you share it with us. Thank you.
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