GTP-bound proteins

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    • November 13, 2008 at 7:35 pm #306
      Anonymous

        Hi all,

        I am trying to dock a GTP-bound GTPase to another protein. The problem is that apparently RosettaDock does not recognize GTP. I do not want to delete GTP, as I am doing flexible backbone docking, and so deleting GTP might result in wrong structures. I appreciate any help. Thank you so much in advance.

        mbh

      • November 19, 2008 at 4:22 pm #4030
        Anonymous

          Having a GTP molecule present durng docking is not possible in the current version of RosettaDock.

          Aroop

          > Hi all,
          >
          > I am trying to dock a GTP-bound GTPase to another protein. The problem is that apparently RosettaDock does not recognize GTP. I do not want to delete GTP, as I am doing flexible backbone docking, and so deleting GTP might result in wrong structures. I appreciate any help. Thank you so much in advance.
          >
          > mbh

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