Unexpected Error with RosettaCM –

Hi all,

I am hoping to get some insight, my RosettaCM is crashing for an issue I haven’t seen before. See below:

Terry

Error:

 

core.scoring.ScoreFunctionFactory: SCOREFUNCTION: stage3.wts

score_typeextract failed: fa_plane

ERROR: bad line in file stage3.wts:fa_plane 0

ERROR:: Exit from: src/core/scoring/ScoreFunction.cc line: 458

BACKTRACE:

[0x5e10498]

[0x459a6ec]

[0x459aa36]

[0x459ab31]

[0x45b4083]

[0x45b4dca]

[0x38f6a19]

[0x38fe637]

[0x39461b1]

[0x3947691]

[0x39ead68]

[0x41181b]

[0x63080e4]

[0x627cfd]

Error: [ ERROR ] ERROR: Exception caught by JobDistributor while trying to get pose from job ‘S_0001’

Error: [ ERROR ]

 

File: src/core/scoring/ScoreFunction.cc:458

[ ERROR ] UtilityExitException

ERROR: bad line in file stage3.wts:fa_plane 0

 

 

Error: [ ERROR ]

Error: [ ERROR ] Treating failure as bad input; canceling similar jobs

protocols.jd2.FileSystemJobDistributor: job failed, reporting bad input; other jobs of same input will be canceled: S_0001

protocols.jd2.JobDistributor: no more batches to process…

protocols.jd2.JobDistributor: 5 jobs considered, 1 jobs attempted in 5 seconds

Error: [ ERROR ] Exception caught by rosetta_scripts application:

 

File: src/protocols/jd2/JobDistributor.cc:328

1 jobs failed; check output for error messages

Error: [ ERROR ]

Submission script:

/home/rosetta/main/source/bin/rosetta_scripts.static.linuxgccrelease -database /home/rosetta/main/database @flags -in:file:fasta NAME.fasta -parser:protocol hybridize3.xml -nstruct 5 -suffix #-parser::output_schema output1.txt

XML:

<ROSETTASCRIPTS>

<SCOREFXNS>

 <ScoreFunction name=”r15″ weights=”ref2015″/>

    <ScoreFunction name=”stage1″ weights=”score3″ symmetric=”0″>

        <Reweight scoretype=”atom_pair_constraint” weight=”0.5″ />

    </ScoreFunction>

    <ScoreFunction name=”stage2″ weights=”score4_smooth_cart” symmetric=”0″>

        <Reweight scoretype=”atom_pair_constraint” weight=”0.5″ />

    </ScoreFunction>    

    <ScoreFunction name=”fullatom” weights=”ref2015_cart” symmetric=”0″ >

        <Reweight scoretype=”atom_pair_constraint” weight=”0.1″/>

    </ScoreFunction>

</SCOREFXNS>

<MOVERS>

    <Hybridize name=”hybridize” stage1_scorefxn=”stage1″ stage2_scorefxn=”stage2″ fa_scorefxn=”fullatom” batch=”1″ stage1_increase_cycles=”1.0″ stage2_increase_cycles=”1.0″>

  <Template pdb=”/home/terry/homology/Adrian1/templates/XXXX_0001.pdb.pdb” cst_file=”AUTO” weight=”1.0″ /> 

  <Template pdb=”/home/terry/homology/Adrian1/templates/XXXX_0001.pdb.pdb” cst_file=”AUTO” weight=”0.5″ />

  <Template pdb=”/home/terry/homology/Adrian1/templates/XXXX_0001.pdb.pdb” cst_file=”AUTO” weight=”0.5″ />

  <Template pdb=”/home/terry/homology/Adrian1/templates/XXXX_0001.pdb.pdb” cst_file=”AUTO” weight=”0.4″ />

  <Template pdb=”/home/terry/homology/Adrian1/templates/XXXX_0001.pdb.pdb” cst_file=”AUTO” weight=”0.4″ />

  <Template pdb=”/home/terry/homology/Adrian1/templates/XXXX_0001.pdb.pdb” cst_file=”AUTO” weight=”0.3″ />

  <Template pdb=”/home/terry/homology/Adrian1/templates/XXXX_0001.pdb.pdb” cst_file=”AUTO” weight=”0.3″ />

  <Template pdb=”/home/terry/homology/Adrian1/templates/XXX_0001.pdb.pdb” cst_file=”AUTO” weight=”0.2″ />

  <Template pdb=”/home/terry/homology/Adrian1/templates/XXXX_0001.pdb.pdb” cst_file=”AUTO” weight=”0.2″ />

  <Template pdb=”/home/terry/homology/Adrian1/templates/XXXX_0001.pdb.pdb” cst_file=”AUTO” weight=”0.1″ />

    </Hybridize>

<FastRelax name=”relax” scorefxn=”r15″  />

</MOVERS>

<PROTOCOLS>

    <Add mover=”hybridize”/>

    <Add mover=”relax”/>

</PROTOCOLS>

</ROSETTASCRIPTS>