This is my paths.txt file for abinitio prediction.. as i don’t have any starting structure i did not specify here
but getting error ” asking path for pdb1, pdb2 as well as FRAGMENTS
I am not really sure where i am going wrong , can any one suggest me..
Thank you
INPUT PATHS:
pdb1
pdb2
alternate data files /home/svu/g0601125/abinitio/
fragments /home/svu/g0601125/abinitio/
structure dssp,ssa (dat,jones) /home/svu/g0601125/abinitio/
sequence fasta,dat,jones /home/svu/g0601125/abinitio/
constraints
starting structure
data files /app1/linux/Rosetta++/RosettaBundle-2.3.0/rosetta_database/
movie /home/svu/g0601125/abinitio/
pdb path /home/svu/g0601125/abinitio/output/
score /home/svu/g0601125/abinitio/output/scores/
status /home/svu/g0601125/abinitio/
user /home/svu/g0601125/abinitio/output/
FRAGMENTS:
2 number of fragment files
3 file 1 size
aat000_03_05.200_v1_3
9 file 2 size
.
