incomplete installation or something else

This topic has 5 replies, 2 voices, and was last updated 5 years, 6 months ago by Anonymous.

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- June 14, 2019 at 7:49 am #3176
  Anonymous
  Hello,
  
  My pyrosetta do not have rosetta/bin or pyrosetta/bin. So I can not run match.linuxgccrelease and so on. why?
  
  Thanks for any help!
- June 14, 2019 at 2:40 pm #14773
  Anonymous
  PyRosetta does not include Rosetta apps. Most applications, however, are wrapped in a mover. The matcher can be accessed in PyRosetta through rosetta.protocols.match, but your best bet is to install vanilla Rosetta.
  - June 17, 2019 at 12:47 am #14777
    Anonymous
    Thanks for your reply!
    
    My pyrosetta version is pyrosetta4. release.python27. ubuntu.release-224 and the system is Windows 10. My pyrosetta does not have rosetta.protocols.match too. How can I add the protocols or movers in pyrosetta?
    
    Best,
    
    Hui
  - June 17, 2019 at 9:10 pm #14781
    Anonymous
    First, are you runing Ubuntu in an emulator?
    
    You have to do:
    
    from rosetta import *
    
    from rosetta.protocols.match import *
    
    I highly recommend you not use PyRosetta for this task as it will be tricky to get the same functionality as the app.
- June 18, 2019 at 12:51 am #14782
  Anonymous
  Yes, I run Ubuntu in ipython. And I try the commands as you provided.
  
  You know that the directory is important for the running of the command, however, as a beginner, I can not find the directory of the command match.
  
  If the pyrosetta is not fit for this task as you said, do you think the pyrosetta toolkit was a better choice ? or is rosetta app the only choice?
  
  Thank you very much!
  - June 18, 2019 at 3:31 pm #14784
    Anonymous
    Hi. THere is no directory – you must import that (rosetta.protocols.match.MatchMover) in python. Yes, as a beginner, I would use the app.
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