FARFAR2 structure prediction give a circular RNA

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    • July 25, 2019 at 11:58 am #3203
      Anonymous

        i have suplied Farafar2 with an RNA sequences of length 47. the server returns a complete circular structure. i dont have a template and am just giving the fasta file. when i give the dot-bracket structure along with the fasta file, it returns an error too.  

      • November 11, 2019 at 10:39 pm #15054
        Anonymous

          What is the error returned? How is the FASTA formatted? You need to make sure your dot-bracket secondary structure is the same length as the sequence.

          Your fasta should look like: 


          
>rna_name A:1-47
          
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

          for example, and your secondary structure should be 47 characters long.

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