Error in Loop Modeling

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    • #3209
      Anonymous

        In the Loop Modeling tutorial when I was performing the Modeling Missing Loops by executing this command

        $ROSETTA3/bin/remodel.linuxgccrelease @flag_missing_loops

        it gives me am error

        protocols.forge.remodel.RemodelMover: ** randomize_stage

        core.kinematics.AtomTree: [ ERROR ] No proper DoF can be found for these four atoms: 14-1, 14-2, 14-3, 15-1!

        core.kinematics.AtomTree: [ WARNING ] DOF for this torsion angle could not be found in AtomTree.

        core.conformation.Conformation: [ WARNING ] Unable to set torsion angle in atom_tree: TorsionID 14 BB 2

        core.kinematics.AtomTree: [ ERROR ] No proper DoF can be found for these four atoms: 14-2, 14-3, 15-1, 15-2!

        core.kinematics.AtomTree: [ WARNING ] DOF for this torsion angle could not be found in AtomTree.

        core.conformation.Conformation: [ WARNING ] Unable to set torsion angle in atom_tree: TorsionID 14 BB 3

        core.kinematics.AtomTree: [ ERROR ] No proper DoF can be found for these four atoms: 14-3, 15-1, 15-2, 15-3!

        core.kinematics.AtomTree: [ WARNING ] DOF for this torsion angle could not be found in AtomTree.

        core.conformation.Conformation: [ WARNING ] Unable to set torsion angle in atom_tree: TorsionID 15 BB 1

        core.kinematics.AtomTree: [ ERROR ] No proper DoF can be found for these four atoms: 14-1, 14-2, 14-3, 15-1!

        core.kinematics.AtomTree: [ WARNING ] DOF for this torsion angle could not be found in AtomTree.

        core.conformation.Conformation: [ WARNING ] Unable to set torsion angle in atom_tree: TorsionID 14 BB 2

        core.kinematics.AtomTree: [ ERROR ] No proper DoF can be found for these four atoms: 14-2, 14-3, 15-1, 15-2!

        core.kinematics.AtomTree: [ WARNING ] DOF for this torsion angle could not be found in AtomTree.

        . . . . . . . . . . . . . . . .

        I don’t understand what’s the problem. I have matched all of my newly built files with the files already provided by rosetta tutorial, but I can’t find any difference.

         

         

         

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