/database folder after running “install_dependencies.pl” size 657 GB?

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September 3, 2019 at 10:32 am #3243

Anonymous

Dear Friends,

I nearly ran out of space after running “install_dependencies.pl”. Among the programs it installs, /database folder whcih includes “nr” sizes up to 657 GB. Can you please let me know if this is possible?



du -ach



547M	databases/nr.38.phr

3.3M	databases/nr.49.pog

36K	databases/nr.50.ppd

263M	databases/nr.20.psq

1.9G	databases/nr_pfilt.13.phr

12M	databases/nr.99.phd

4.0K	databases/nr.91.tar.gz.md5

1.3G	databases/nr.103.phr

156M	databases/nr.72.psd

161M	databases/nr.90.phr

98M	databases/nr.133.psd

18M	databases/nr.54.pin

536K	databases/nr.100.pog

9.8M	databases/nr.130.pog

2.1M	databases/nr.15.ppd

28M	databases/nr.106.pnd

9.4M	databases/nr.122.pog

20M	databases/nr.82.pin

2.4G	databases/nr_pfilt.25.psq

468K	databases/nr.103.phi

65M	databases/nr.101.pnd

12M	databases/nr_pfilt.00.pnd

136K	databases/nr.89.pni

657G	databases/

657G	total

I have 1TB /media folder and because of this size it is almost full. Thanks!

September 3, 2019 at 5:15 pm #14927

Anonymous

that seems about right. unfortunately the NR database is quite large but necessary.

for reference on my install:



41M     blast

46M     csblast

425G    databases

11K     install_dependencies.pl

33K     make_fragments.pl

48M     pdb_seqres.txt

14M     pdb_seqres.txt.phr

4.0M    pdb_seqres.txt.pin

40M     pdb_seqres.txt.psq

2.2M    psipred

512     signature

109M    sparks-x

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