FARFAR2 error

Member Site › Forums › ROSIE › ROSIE – General › FARFAR2 error

Viewing 2 reply threads
  • Author
    Posts
    • February 11, 2020 at 4:09 pm #3343
      Anonymous

        Hi ROSIE and FARFAR2 team,

               I used FARFAR2 to test the 3D structure prediction of several RNAs two weeks ago with native PDB uploaded. But all the jobs were finally dead with the error message “2-rescore_to_native_or_lowest”. Could you tell me why this happened? You can find the sequence, 2D structure, and native PDB in the attachment.

              Another problem is that recently I cannot submit jobs using FARFAR2. It stopped in the process “Submitting FARFAR2 job…” and did not proceed any more. I tested Chrome and Firefox web browser, but neither of them worked.

              Thanks,

        Jun

      • February 11, 2020 at 4:11 pm #15142
        Anonymous

          There may be a bug you’ve caught with handling of a supplied native PDB. I will debug this and push a fix over the next couple days. (We made a number of upgrades in recent days that may have introduced new issues.)

          Thanks for using the server!

        • April 20, 2020 at 8:56 am #15246
          Anonymous

            Hi,

            I cannot submit any jobs to FarFar2 using the option:

            “Use [almost] any options available to command line FARFAR2, including local template structures, “general” secondary structure (allowing noncanonical pairs), chemical mapping data, and more.”

             

            Thank you!!

             

             

        • Author
          Posts
        Viewing 2 reply threads
        • You must be logged in to reply to this topic.