Hello
Can someone please give an example of a simple xml file and commandline for running the GreedyOptMutationMover to optimize the affinity of an interface of 2 proteins in a PDB file by mutation residues in a sequence of one of the proteins? The protein being mutated is relatively stable but the mutations are in a loop. What taskoperators and additional movers (repacking or backrub?) are necessary for doing this and reporting the change in ddG?
Thanks!
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