I’m trying to install Pyrosetta using Colab with the workshop notebooks but I keep getting errors. The main error is locating the tar file in My Drive. The code I’m running is:
#sys.path.insert(0, google_drive_packages_path)
# installing PyRosetta
if sys.version_info.major != 3 or sys.version_info.minor != 6:
print(‘Need Python-3.6 to run!’)
sys.exit(1)
import_start_time = time.time()
# upload PyRosetta Linux package into your google drive and put it path here
pyrosetta_distr_path = google_drive.replace(‘ ‘, ‘\ ‘) + ‘/PyRosetta/*’
!tar xjf $pyrosetta_distr_path -C PyRosetta –strip-components=1
!cd PyRosetta/setup && python setup.py install –install-lib=$pyrosetta_install_prefix_path
!rm -rf PyRosetta
import_end_time = time.time()
print(f’PyRosetta setup took: {import_end_time – import_start_time:.1f}s…’)
I have a folder called Pyrosetta in My Drive as directed. I think the problem lies here pyrosetta_distr_path = google_drive.replace(‘ ‘, ‘\ ‘) + ‘/PyRosetta/*’
tar (child): /content/google_drive/My Drive/PyRosetta/*: Cannot open: No such file or directory tar (child): Error is not recoverable: exiting now tar: Child returned status 2 tar: Error is not recoverable: exiting now /bin/bash: line 0: cd: PyRosetta/setup: No such file or directory PyRosetta setup took: 2.2s…
When I go to put the path for the tar file instead I get an invalid syntax error.
Not really sure how to solve this.
.
