Constraint generator

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    • #3467
      Anonymous

         

        Question on using HydrogenBondConstraintGenerator

         

        The score function I am using is ref2015.wts. It is said that to apply constraint properly, the scorefunction being used needs to have a non-zero weight for the appropriate constraint score term. Does that mean I need to add coorndinate_constraint, atom_pair_constraint or/and angel_constraint into ref2015?

         

        If I want to apply for constraint while docking, but want the original score (without constraint) to be displayed. Do I set mover like this?

         

        <Add mover=”add_csts” />

            docking mover here

        <Add mover=”rm_csts” />

        <Add mover=”add_scores”/>

         

        Thanks!

      • #15342
        Anonymous

          Also, can I use HydrogenBondConstraintGenerator to generate H bonds constraint between ligand (for example FMN) and amino acid residue? 

           

          Thanks

           

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