Warning: Fold tree is not set properly for density scoring

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    • July 13, 2020 at 5:50 pm #3506
      Anonymous

        I am trying to build glycans into a cryoEM density following the Meiler Lab tutorial here: http://www.meilerlab.org/jobs/downloadfile/name/Apr2019_glycan_modeling_talk.pdf

         

        Using the provided XML file, I am able to run the job, but I see the following warning throughout the output file:

        0mcore.scoring.electron_density.FastDensEnergy: ^[[0m^[[1m[ WARNING ]^[[0m Fold tree is not set properly for density scoring!

         

        What does this warning mean? Will this have an impact on the results?

      • July 14, 2020 at 5:27 pm #15404
        Anonymous

          Hello,

          In order to use electron density the SetupForDensityScoring mover must be run first  (ie the Add block must come first) and the “-mapfile {mymafile.mrc} ” flags must be given.

           

          That warning means that currently you are not using electron density in the simulations. 


          
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<SetupForDensityScoring name="setupdens"  />
          
....
          

          
<Add mover="setupdens"/>
          
....

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