Rosetta phenix1.18 mr_rosetta ubuntu18.04

This topic has 1 reply, 2 voices, and was last updated 5 years, 2 months ago by Anonymous.

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- September 30, 2020 at 2:53 am #3588
  Anonymous
  dear Rosetta,
  
  When I try to intergrate rosetta with phenix, I recieve follow issues:
  
  rosetta.build_phenix_interface nproc=8
  
  Substituting phenix.python into build shell scripts
  
  update_options.sh
  
  update_ResidueType_enum_files.sh
  
  Phenix modules found : /usr/local/phenix-1.18.2-3874/modules/phenix
  
  Traceback (most recent call last):
  
  File “/usr/local/phenix-1.18.2-3874/build/../modules/phenix/phenix/command_line/rosetta_build_phenix_interface.py”, line 268, in <module>
  
  run(sys.argv[1:])
  
  File “/usr/local/phenix-1.18.2-3874/build/../modules/phenix/phenix/command_line/rosetta_build_phenix_interface.py”, line 228, in run
  
  f=file(“dispatcher_include_erraser.sh”, “wb”)
  
  IOError: [Errno 13] Permission denied: ‘dispatcher_include_erraser.sh’
  
  My steps are following:
  
  1: rosetta has been installed sucessfully(I try abinito turiol)
  
  2: I install the phenix 1.18
  
  3: I open the terminal ,exprot PHENIX_ROSETTA_PATH and ROSETTA3_DB, and I check use command echo $
```
4: I copy the site.settings file

to ${PHENIX_ROSETTA_PATH}/main/source/tools/build/site.settings
```
  5: then I type the command rosetta.build_phenix_interface nproc=8,then error.
  
  How can I solve it?
- October 1, 2020 at 3:56 pm #15533
  Anonymous
  hello,
  
  the error:
```
IOError: [Errno 13] Permission denied: 'dispatcher_include_erraser.sh'
```
  means you are unable to write the file due to your os’s permissions.
  
  I’m not sure what directory you’re installing in, but I would you can either install under your /home directory instead of /usr
  
  or, you could run your command as root via the following (less recommended)
```
sudo rosetta.build_phenix_interface nproc=8
```
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