Running RosettaScripts, but got an error “src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type”

This topic has 3 replies, 2 voices, and was last updated 3 years, 7 months ago by Anonymous.

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- February 28, 2021 at 4:51 pm #3702
  Anonymous
  Hello,
  
  I’m a new user wants to run a RosettaScripts with disulfize mover, but right after I start the scripts, I got the following crash report. Any comments or suggestions on how to solve the issues? Thanks a million.
  
  [START_CRASH_REPORT]
  
  [ROSETTA_VERSION]: 2020.08+release.cb1caba
  
  [COMMIT_DATE]: 2020-02-21T14:46:08.581859
  
  [APPLICATION]: UNKNOWN APPLICATION
  
  [MODE]: Release
  
  [EXTRAS]: default
  
  [OS]: GNU/Linux
  
  [COMPILER]: GCC version “8.3.0”
  
  [STDLIB]: libstdc++ version 20190406
  
  [START_OPTIONS]
  
  NO OPTIONS SPECIFIED
  
  [END_OPTIONS]
  
  [START_BACKTRACE]: RAW_LIBC
  
  /home/zhoubin/Desktop/rosetta_3.12/main/source/build/src/release/linux/5.4/64/x86/gcc/8/default/libcore.6.so(backtrace_string[abi:cxx11](int)+0x43) [0x7f06198572e3]
  
  /home/zhoubin/Desktop/rosetta_3.12/main/source/build/src/release/linux/5.4/64/x86/gcc/8/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe4) [0x7f061509c144]
  
  /home/zhoubin/Desktop/rosetta_3.12/main/source/build/src/release/linux/5.4/64/x86/gcc/8/default/libutility.so(utility::options::OptionCollection::set_option_value_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&)+0x4bb) [0x7f0614ff7cab]
  
  /home/zhoubin/Desktop/rosetta_3.12/main/source/build/src/release/linux/5.4/64/x86/gcc/8/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x108) [0x7f0614ffa9f8]
  
  /home/zhoubin/Desktop/rosetta_3.12/main/source/build/src/release/linux/5.4/64/x86/gcc/8/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x149) [0x7f0614ffdd39]
  
  /home/zhoubin/Desktop/rosetta_3.12/main/source/build/src/release/linux/5.4/64/x86/gcc/8/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x136) [0x7f0614ffe646]
  
  /home/zhoubin/Desktop/rosetta_3.12/main/source/build/src/release/linux/5.4/64/x86/gcc/8/default/libcore.6.so(core::init::init_options(int, char**)+0x1f) [0x7f06198aa74f]
  
  /home/zhoubin/Desktop/rosetta_3.12/main/source/build/src/release/linux/5.4/64/x86/gcc/8/default/libcore.6.so(core::init::init(int, char**)+0x29) [0x7f06198ae959]
  
  rosetta_scripts.default.linuxgccrelease() [0x4023ba]
  
  /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xeb) [0x7f061445809b]
  
  rosetta_scripts.default.linuxgccrelease() [0x40294a]
  
  [END_BACKTRACE]
  
  [FILE]: src/utility/options/OptionCollection.cc
  
  [LINE]: 1153
  
  [START_MESSAGE]
  
  No values of the appropriate type specified for multi-valued option -in:file:s
  
  [END_MESSAGE]
  
  [END_CRASH_REPORT]
- March 1, 2021 at 4:09 pm #15770
  Anonymous
  It looks like you need to pass a pdb file using the -s option. Or -l. What is your cmd-line input?
  - March 2, 2021 at 1:56 am #15774
    Anonymous
    Here is the command line I used for running the scripts:
    
    rosetta_scripts.static.linuxgccrelease -s <Test.pdb> -use_input_sc -nstruct 20 -ex1 -ex2 -parser:protocol DisulfScan.xml
    
    Thanks,
    
    Bin
  - March 2, 2021 at 6:11 am #15776
    Anonymous
    I realized that my filename has angle brackets, after I removed the brackets, the scripts are running smoothly. Thanks.
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