Obtaining all PDB IDs containing similar binding sites for a specific ligand

Member Site Forums Rosetta 3 Rosetta 3 – General Obtaining all PDB IDs containing similar binding sites for a specific ligand

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      Anonymous

        Hi all, 

        Is it possible to search the proteins having similar binding sites for a specific ligand in Rosetta? I need to classify proteins based their binding site similarities -in terms of RMSD. If it is possible, how can I do this? Thanks in advance. 

         

        Antonia

         

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