Internal error while running AbinitioRelax

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    • June 13, 2021 at 10:44 am #3794
      Anonymous

        I am trying to learn Rosetta without any background computer science or bioinformatics. I tried to run the AbinitioRelax.default.linuxrelease program with the proper input files and got the following internal error –

        [FILE]: src/core/chemical/GlobalResidueTypeSet.cc

        [LINE]: 149

        [START_MESSAGE]

        [ ERROR ] UtilityExitException

        ERROR: Unable to open file: /home/rosetta/main/database/chemical/residue_type_sets/fa_standard/residue_types.txt

        [END_MESSAGE]

        [END_CRASH_REPORT]

         

        P.S. – I am using a virtual box with ubuntu 20.04 LTE for practicing Rosetta. Any help/advice is appreciated.

      • June 14, 2021 at 1:53 pm #15927
        Anonymous

          Does the file /home/rosetta/main/database/chemical/residue_type_sets/fa_standard/residue_types.txt  exist? (Can you find it at that location outside of Rosetta?) Does it have the appropriate permissions? (e.g. what does `ls -l /home/rosetta/main/database/chemical/residue_type_sets/fa_standard/residue_types.txt` give you?)

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