farfar2 error

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    • October 8, 2021 at 6:10 am #3852
      Anonymous

        Hello

        I am trying to model a 514-nt long RNA structure using farfar2. My job failed with the following error

        ERROR: Not complementary at positions A    8 and U   13

        I do not understand this, A and U are complementary  and I have checked both the input sequence and dot bracket files and I dont see any discrepancies. Attaching both inputs and the Rosie crash log file. Could someone please help me sort the error.

        Thank you

      • October 8, 2021 at 5:29 pm #16041
        Anonymous

          The sequence has to be lowercase. (Since Rosetta supports protein modeling too, in a sequence A indicates alanine.)

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