Hi,
I’m totally new to using Rosetta and TACC. when I tried to use rna_denovo.cxx11mpi.linuxiccrelease in TACC, it pops up an error:
” protocols.jd3.JobDistributorFactory: (0) [ ERROR ] JD3 cannot be used with MPI but without serialization; you must add “extras=mpi,serlization” to your ./scons.py build command “
I did some search on the forum and one suggested using another program with a different extension, but TACC only have “cxx11mpi.linuxiccrelease” version.
Thank you for your input.
my sbatch script is:
“
#!/bin/bash
#SBATCH -J RosettaRun_%j # job name
#SBATCH -o myMPI.o%j # output and error file name (%j expands to jobID)
#SBATCH -e myMPI.e%j
#SBATCH -N 1
#SBATCH -n 16 # total number of mpi tasks requested
#SBATCH -p normal # queue (partition) — normal, development, etc.
#SBATCH -t 00:30:00 # run time (hh:mm:ss) – 1.5 hours
#SBATCH –mail-user=username@example.com
#SBATCH –mail-type=fail # email me if the job fails
module load intel/18.0.2
module load impi/18.0.2
module load rosetta
#Alter the job control above as desired and then use “ibrun” to launch your jobs
ibrun rna_denovo.cxx11mpi.linuxiccrelease @ flags
“
.
