SnugDock or RosettaDock for HDX-MS data

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    • December 16, 2021 at 5:18 pm #3885
      Anonymous

        Hello,

        A general question would be whether there is a docking protocol for HDX-MS. Can I get a share? 

        Then I have two questions to the paper “Robustification of RosettaAntibody and Rosetta SnugDock” from Gray’s group:

        1. In the appendix section of the paper, you described KofNConstraint. Should this constraint file be used under “-constraints : cst_fa_file high – res. cst” or “ -constraints : cst_file low – res. cst” or both? Any weight for constraint should be taken?

        2.  If I want to use Motif Dock Score option. I have to make my own motif table, right? Is there a table can be downloaded?

         

         

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