Reply To: clustering_decoy

i am generates in silent format

> Are you generating them in pdb or silent format?

>
> > i am generated 3 x of 9999 decoy, did i need to merge them befor clustering analysis? if yes how?
> > > hi..
> > >
> > > how to identify the best decoy according to clustering tree.
> > > if my protein is 176 aa, how many decoy should i generate