Reply To: Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure

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January 25, 2011 at 6:25 am #4851
Anonymous

    Hi,

    I am still not clear about creating a fragment library … I have submitted my sequence in robetta server for creating a fragment library but it has not asked for the size of fragment to be searched for.

    Also I was reading the following documentation http://www.rosettacommons.org/guide/Fragments about how to create a fragment library , but there also its no where mentioned about defining the size of fragment to be searched.

    So , I am stating my query here again .. I want to create a library of loop fragments of increasing length from 8 onwards .. Can anybody guide me how can I achieve it using rosetta.