GLIBCXX_3.4.9 Not found – libmini.so

This topic has 6 replies, 4 voices, and was last updated 14 years, 4 months ago by Anonymous.

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- March 10, 2010 at 12:56 am #494
  Anonymous
  The version of libstdc++ is older than the rosetta libmini.so needs. Is there a way to get the source code to recompile the rosetta software with my installed libraries or is there another way? I’m running Red Hat Enterprise Client 5.4
  
  Dwayne
  
  Linux 2.6.18-164.9.1.el5 #1 SMP Wed Dec 9 03:27:37 EST 2009 x86_64 x86_64 x86_64 GNU/Linux
  
  Python 2.6.4 (r264:75706, Mar 8 2010, 21:01:17)
  [GCC 4.1.2 20080704 (Red Hat 4.1.2-46)] on linux2
  Type “help”, “copyright”, “credits” or “license” for more information.
  >>> from rosetta import *
  Traceback (most recent call last):
  File ““, line 1, in
  File “rosetta/__init__.py”, line 14, in
  import utility, core
  File “rosetta/utility/__init__.py”, line 1, in
  from _rosetta_utility_000 import *
  ImportError: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.9′ not found (required by rosetta/libmini.so)
  
  [root@mint rosetta]# rpm -qa | grep glibc
  glibc-2.5-42.el5_4.3
  glibc-headers-2.5-42.el5_4.3
  glibc-devel-2.5-42.el5_4.3
  glibc-2.5-42.el5_4.3
  compat-glibc-headers-2.3.4-2.26
  compat-glibc-2.3.4-2.26
  compat-glibc-2.3.4-2.26
  glibc-devel-2.5-42.el5_4.3
  glibc-common-2.5-42.el5_4.3
- May 17, 2010 at 9:15 am #4451
  Anonymous
  > The version of libstdc++ is older than the rosetta libmini.so needs. Is there a way to get the source code to recompile the rosetta software with my installed libraries or is there another way? I’m running Red Hat Enterprise Client 5.4
  >
  > Dwayne
  >
  > Linux 2.6.18-164.9.1.el5 #1 SMP Wed Dec 9 03:27:37 EST 2009 x86_64 x86_64 x86_64 GNU/Linux
  >
  >
  > Python 2.6.4 (r264:75706, Mar 8 2010, 21:01:17)
  > [GCC 4.1.2 20080704 (Red Hat 4.1.2-46)] on linux2
  > Type “help”, “copyright”, “credits” or “license” for more information.
  > >>> from rosetta import *
  > Traceback (most recent call last):
  > File “”, line 1, in
  > File “rosetta/__init__.py”, line 14, in
  > import utility, core
  > File “rosetta/utility/__init__.py”, line 1, in
  > from _rosetta_utility_000 import *
  > ImportError: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.9′ not found (required by rosetta/libmini.so)
  >
  > [root@mint rosetta]# rpm -qa | grep glibc
  > glibc-2.5-42.el5_4.3
  > glibc-headers-2.5-42.el5_4.3
  > glibc-devel-2.5-42.el5_4.3
  > glibc-2.5-42.el5_4.3
  > compat-glibc-headers-2.3.4-2.26
  > compat-glibc-2.3.4-2.26
  > compat-glibc-2.3.4-2.26
  > glibc-devel-2.5-42.el5_4.3
  > glibc-common-2.5-42.el5_4.3
  >
  
  Hi, I just joind the forum.
  
  In case you have this issue not solved yet:
  
  You need to compile python 2.6 with GCC >= 4.2.0 (I suggest gcc-4.3.2).
  Then prepend the path to the new compiled python to $PATH and here you go.
  
  Cheers
  Bjoern
  - August 5, 2010 at 11:56 am #4549
    Anonymous
    > > The version of libstdc++ is older than the rosetta libmini.so needs. Is there a way to get the source code to recompile the rosetta software with my installed libraries or is there another way? I’m running Red Hat Enterprise Client 5.4 %%%
    > > %%%
    > > Python 2.6.4 (r264:75706, Mar 8 2010, 21:01:17) %%%
    > > [GCC 4.1.2 20080704 (Red Hat 4.1.2-46)] on linux2%%%
    > > Type “help”, “copyright”, “credits” or “license” for more information.%%%
    > > >>> from rosetta import *%%%
    > > [[…]%%%
    > > ImportError: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.9′ not found (required by rosetta/libmini.so)%%%
    > > [[…]%%%
    > %%%
    > In case you have this issue not solved yet:%%%
    > %%%
    > You need to compile python 2.6 with GCC >= 4.2.0 (I suggest gcc-4.3.2).%%%
    > Then prepend the path to the new compiled python to $PATH and here you go.%%%
    
    I did this (compiled Python with gcc 4.4.4) and it just lead to the next error:
    
    bash-3.2$ /usr/struct/bin/python-2.6Python 2.6.2 (r262:71600, Aug 4 2010, 14:04:02)
    [[GCC 4.4.4] on linux2
    Type “help”, “copyright”, “credits” or “license” for more information.
    >>> from rosetta import *
    Traceback (most recent call last):
    File “”, line 1, in
    File “/struct/software/linux/pyrosetta-1.1/rosetta/__init__.py”, line 14, in
    import utility, core
    File “/struct/software/linux/pyrosetta-1.1/rosetta/utility/__init__.py”, line 1, in
    from _rosetta_utility_000 import *
    ImportError: /struct/software/linux/pyrosetta-1.1/rosetta/libboost_python-mt-py26.so.1.38.0: undefined symbol: PyUnicodeUCS4_FromEncodedObject
    >>>
    
    I’ll open a separate thread for this problem.
    
    frank
  - August 5, 2010 at 12:05 pm #4550
    Anonymous
    > ImportError: /struct/software/linux/pyrosetta-1.1/rosetta/libboost_python-mt-py26.so.1.38.0: undefined symbol: PyUnicodeUCS4_FromEncodedObject
    > >>>
    
    See thread [http://www.rosettacommons.org/node/1901symbol: PyUnicodeUCS4_FromEncodedObject (from libboost_python-mt-py26.so.1.38.0)] for this problem.
    
    frank
  - August 5, 2010 at 12:32 pm #4552
    Anonymous
    > > ImportError: /struct/software/linux/pyrosetta-1.1/rosetta/libboost_python-mt-py26.so.1.38.0: undefined symbol: PyUnicodeUCS4_FromEncodedObject %%%
    
    %%%
    
    Solved in [http://www.rosettacommons.org/node/1901symbol: PyUnicodeUCS4_FromEncodedObject (from libboost_python-mt-py26.so.1.38.0)]
    
    frank
- July 23, 2010 at 5:57 am #4499
  Anonymous
  > The version of libstdc++ is older than the rosetta libmini.so needs. Is there a way to get the source code to recompile the rosetta software with my installed libraries or is there another way? I’m running Red Hat Enterprise Client 5.4
  >
  > Dwayne
  >
  > Linux 2.6.18-164.9.1.el5 #1 SMP Wed Dec 9 03:27:37 EST 2009 x86_64 x86_64 x86_64 GNU/Linux
  >
  >
  > Python 2.6.4 (r264:75706, Mar 8 2010, 21:01:17)
  > [GCC 4.1.2 20080704 (Red Hat 4.1.2-46)] on linux2
  > Type “help”, “copyright”, “credits” or “license” for more information.
  > >>> from rosetta import *
  > Traceback (most recent call last):
  > File “”, line 1, in
  > File “rosetta/__init__.py”, line 14, in
  > import utility, core
  > File “rosetta/utility/__init__.py”, line 1, in
  > from _rosetta_utility_000 import *
  > ImportError: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.9′ not found (required by rosetta/libmini.so)
  >
  > [root@mint rosetta]# rpm -qa | grep glibc
  > glibc-2.5-42.el5_4.3
  > glibc-headers-2.5-42.el5_4.3
  > glibc-devel-2.5-42.el5_4.3
  > glibc-2.5-42.el5_4.3
  > compat-glibc-headers-2.3.4-2.26
  > compat-glibc-2.3.4-2.26
  > compat-glibc-2.3.4-2.26
  > glibc-devel-2.5-42.el5_4.3
  > glibc-common-2.5-42.el5_4.3
  >
- July 23, 2010 at 5:58 am #4500
  Anonymous
  > The version of libstdc++ is older than the rosetta libmini.so needs. Is there a way to get the source code to recompile the rosetta software with my installed libraries or is there another way? I’m running Red Hat Enterprise Client 5.4
  >
  > Dwayne
  >
  > Linux 2.6.18-164.9.1.el5 #1 SMP Wed Dec 9 03:27:37 EST 2009 x86_64 x86_64 x86_64 GNU/Linux
  >
  >
  > Python 2.6.4 (r264:75706, Mar 8 2010, 21:01:17)
  > [GCC 4.1.2 20080704 (Red Hat 4.1.2-46)] on linux2
  > Type “help”, “copyright”, “credits” or “license” for more information.
  > >>> from rosetta import *
  > Traceback (most recent call last):
  > File “”, line 1, in
  > File “rosetta/__init__.py”, line 14, in
  > import utility, core
  > File “rosetta/utility/__init__.py”, line 1, in
  > from _rosetta_utility_000 import *
  > ImportError: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.9′ not found (required by rosetta/libmini.so)
  >
  > [root@mint rosetta]# rpm -qa | grep glibc
  > glibc-2.5-42.el5_4.3
  > glibc-headers-2.5-42.el5_4.3
  > glibc-devel-2.5-42.el5_4.3
  > glibc-2.5-42.el5_4.3
  > compat-glibc-headers-2.3.4-2.26
  > compat-glibc-2.3.4-2.26
  > compat-glibc-2.3.4-2.26
  > glibc-devel-2.5-42.el5_4.3
  > glibc-common-2.5-42.el5_4.3
  >
  
  I am also facing the same problem like you faced. Did you get the solution, levinthal?
  
  Rojan
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