ligand dock residue selection

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    • August 3, 2009 at 2:54 pm #545
      Anonymous

        Is it posible to select specific residues (both sidechains and backbone) which will be modified during the procedure, leaving the rest of the protein structure unchanged? I’m thinking on something like the res file for the other applications.

        Would skipping the protein prepacking with ligand_rpkmin help?

        Thanks in advance.

      • August 12, 2009 at 3:52 pm #4146
        Anonymous

          > Is it posible to select specific residues (both sidechains and backbone) which will be modified during the procedure, leaving the rest of the protein structure unchanged? I’m thinking on something like the res file for the other applications.
          >
          > Would skipping the protein prepacking with ligand_rpkmin help?
          >
          > Thanks in advance.

          OK, now I see I have posted in the wrong forum, since ligand dock is an application from rosetta 3.0 suite. I didn’t realised there were two forums.

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