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June 21, 2011 at 3:14 pm
#5796
Anonymous
“Is there any reference that describes the detailed actions of RepackMinmize mover? ” – http://www.rosettacommons.org/manuals/archive/rosetta3.2_user_guide/RosettaScripts.html#RepackMinimize
Can you be more specific about the core being exposed? Do you mean the protein opened up like a butterfly? This is caused by clashes in the interior being resolved by the minimizer unfolding the backbone instead of the packer repacking the clashes out (it may be possible the packer CAN’T fix them if they’re bad enough.)