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June 27, 2011 at 2:25 pm
#5817
‘Which “psipred” is more reliable? ‘
This is really a question for the developers of psipred more than us. I would hazard a guess that the most recent version is “best”.
I think the secondary structure libraries matter quite a bit to the final result. I’m not aware of anyone benchmarking slightly-different fragment inputs for folding a known structure to see which one comes out best.