Backrub patch

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    • October 27, 2010 at 3:08 pm #685
      Anonymous

        Hi,

        When I add the rosetta3.1_backrub_patch35535 rosetta can’t compile.
        It complains about the new SidechainMover.cc:

        src/protocols/moves/SidechainMover.cc:158: error: ‘const class core::scoring::dunbrack::SingleResidueDunbrackLibrary’ has no member named ‘get_phi_from_rsd’
        src/protocols/moves/SidechainMover.cc:159: error: ‘const class core::scoring::dunbrack::SingleResidueDunbrackLibrary’ has no member named ‘get_psi_from_rsd’
        src/protocols/moves/SidechainMover.cc:186: error: ‘class core::scoring::dunbrack::DunbrackRotamerSampleData’ has no member named ‘chi_probability’
        src/protocols/moves/SidechainMover.cc:195: error: ‘class core::scoring::dunbrack::DunbrackRotamerSampleData’ has no member named ‘assign_random_chi’
        src/protocols/moves/SidechainMover.cc: In member function ‘core::Real protocols::moves::SidechainMover::proposal_density(const core::conformation::Residue&, core::Size, const core::chemical::ResidueType&, const utility::vector1 >&) const’:
        src/protocols/moves/SidechainMover.cc:314: error: ‘const class core::scoring::dunbrack::SingleResidueDunbrackLibrary’ has no member named ‘get_phi_from_rsd’
        src/protocols/moves/SidechainMover.cc:315: error: ‘const class core::scoring::dunbrack::SingleResidueDunbrackLibrary’ has no member named ‘get_psi_from_rsd’
        src/protocols/moves/SidechainMover.cc:330: error: ‘class core::scoring::dunbrack::DunbrackRotamerSampleData’ has no member named ‘chi_probability’
        src/protocols/moves/SidechainMover.cc:336: error: ‘class core::scoring::dunbrack::DunbrackRotamerSampleData’ has no member named ‘chi_probability’

        Also, the new backrub.cc seems to use the “devel” namespace rather than “core”

        What am I doing wrong and is this an important patch?

        Thanks!

      • October 27, 2010 at 5:28 pm #4652
        Anonymous

          You aren’t doing anything wrong; there’s a bug in the patch. I’ve asked someone who fixed it once to remind me how they did it. (Or just tell you directly.)

        • October 27, 2010 at 9:20 pm #4653
          Anonymous

            Here’s a reply from a relevant developer:

            “It might be that this patch requires another previous patch. If there isn’t some other patch that updates the core::scoring::dunbrack namespace, it’s probably easiest to just ignore it and tell the user to wait for the next version. There’s no reason a user absolutely needs this patch. It just prevents a crash if their resfile doesn’t specify any flexible sidechains. If crashes are experienced because of this, the workaround is to add this to the command line:

            -backrub::sc_prob 0

            You could pass that info along if you’d like. Thanks.”

            For what it’s worth, the “next version” should be coming soon.

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