The scripts and input files that accompany this demo can be found in the demos/public directory of the Rosetta weekly releases.

KEYWORDS: NUCLEIC_ACIDS RNA DENOVO STRUCTURE_PREDICTION README written in Nov. 2015 by Rhiju Das. Updated in July 2016 to only use rna_denovo app

This demo recovers the sarcin-ricin loop 1Q9A, leaving out first base pair, which is opened up in crytal structure.

It uses -bps_moves, knowledge-based fragments that include two base pairs separated by at most a 3-nt bulge. (At the time of demo release, there are no benchmarks or publications for this functionality.)

Go into input_files/

$> cd input_files/

and run

$> $ROSETTA3/bin/rna_denovo.default.linuxgccrelease @flags