The scripts and input files that accompany this demo can be found in the demos/public directory of the Rosetta weekly releases.


This protocol runs our snugdock-inspired antibody docking protocol. It uses fragment insertion instead of normal loop modeling, but is otherwise very similar to the orginal.

Assuming Rosetta is in your home directory, you run it as follows (passing a much higher nstruct than this demo is running):

$ ~/Rosetta/main/source/bin/rosetta_scripts.default.linuxgccrelease @flags -nstruct 1

where platform is "linux" or "mac" and compiler is "gcc" or "clang".