The scripts and input files that accompany this demo can be found in the
demos/public directory of the Rosetta weekly releases.
KEYWORDS: SCRIPTING_INTERFACES DESIGN
This is a short demo showing how you can design your protein with flexible backbone using Rosetta Scripts. The flxbb mover can be given a blueprint file to extrapolate into a movemap; does design, can do some relaxation; converts your pose to alanine before designing.
To run the demo simple type:
$> $ROSETTA3/bin/rosetta_scripts.default.linuxgccrelease @flags
resnum residue (ss_struct)(abego) rebuild resnum = consecutive (starting from 1) or 0 (to indicate a new residue not in the input.pdb) residue = one letter code amino acid (e.g. V for Valine) ss_struct = secondary structure, E,L or H. ss_struct and abego are single-letter and have no space between them. abego = abego type (ABEGO), use X if any is allowed rebuild = R (rebuild this position) or "." (leave as is)
1 V LE R (position 1, Val, loop, abego type E, rebuild) 0 V EX R (insert a residue, Val, sheet, any abego, rebuild) 2 V EB . (position 2, Val, sheet, abego type B, do not rebuild)