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ExtractSubpose

(This is a devel Mover and not available in released versions.)

Used to extract a subset of the subunits from a symmetric pose based on contacts with a user specified component (via sym_dof_name(s)). This subpose is dumped as a pdb with the user specified prefix, suffix, and basename derived from the job distributer. DOES NOT MODIFY THE POSE. For each sym_dof_name passed by the user, all neighboring subunits (as assessed by CA or CB contacts with the user specified contact_distance (10.0 A by default)). If extras=true, then all the full building block for each sym_dof will be extracted along with all touching building blocks.

<ExtractSubpose name="(&string)" sym_dof_names="(&string)" prefix="('' &string)" suffix="('' &string)" contact_dist="(10.0 &Real)" extras="(0 &bool)" />
  • sym_dof_names - Name(s) of the sym_dofs corresponding to the primary component(s) to extract along with the neighboring subunits/building blocks. Passed as a string (optionally: with a comma-separated list).
  • prefix - Optional prefix for the output pdb name.
  • suffix - Optional suffix for the output pdb name.
  • contact_dist - Maximum CA or CB distance from any residue in the primary component(s) to any residue in another component for it to be considered a "neighbor" and added to the extracted subpose.
  • extras - Boolean option to set whether or not full building blocks are extracted rather than just subunits.

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