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profile

Autogenerated Tag Syntax Documentation:


XRW_TODO

<profile name="(&string;)" file_name="(&string;)" weight="(0.25 &real;)" />
  • file_name: XRW_TODO
  • weight: XRW TO DO

Sets constraints on the sequence of the pose that can be based on a sequence alignment or an amino-acid transition matrix.

<profile weight="(0.25 &Real)" file_name="(<input file name >.cst &string)"/>

sets residue_type type constraints to the pose based on a sequence profile. file_name defaults to the input file name with the suffix changed to ".cst". So, a file called xxxx_yyyy.25.jjj.pdb would imply xxxx_yyyy.cst. To generate sequence-profile constraint files with these defaults use DockScripts/seq_prof/seq_prof_wrapper.sh

See Also