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SwitchChainOrder

Reorder the chains in the pose, for instance switching between chain B and A. Can also be used to cut out a chain from the PDB (simply state which chains should remain after cutting out the undesired chain).

<SwitchChainOrder name="(&string)" chain_order="(&string)"/>

chain_order: a string of chain numbers. This is the order of chains in the new pose. For instance, "21" will form a pose ordered B then A, "12" will change nothing. Can also be used to reduce the number of chains. For example "1" will only take the first chain. PDBInfoLabels are preserved.

Autogenerated Tag Syntax Documentation:


XRW TO DO

<SwitchChainOrder name="(&string;)" chain_order="(&string;)"
        chain_num="(&nnegative_int_cslist;)" chain_name="(&chain_cslist;)"
        invert_chains="(false &bool;)" residue_numbers_setter="(&string;)"
        scorefxn="(&string;)" />
  • chain_order: Order of final chains
  • chain_num: List of final chain positions, to be correlated to chain_name
  • chain_name: List of final chain names, to be correlated to chain_num
  • invert_chains: If true, apply on the inverse of chain selection (as specified in name or number options)
  • residue_numbers_setter: List of final chain names, to be correlated to chain_num
  • scorefxn: Name of score function to use

  • chain_order: a string of chain numbers. This is the order of chains in the new pose. For instance, "21" will form a pose ordered B then A, "12" will change nothing.

See Also