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Author: Jared Adolf-Bryfogle (jadolfbr@gmail.com)
Modified 20 December 2018 by Vikram K. Mulligan (vmulligan@flatironinstitute.org) to add more output options.
Autogenerated Tag Syntax Documentation:
Author: Jared Adolf-Bryfogle (jadolfbr@gmail.com) A metric for measuring ... and adding it to the resulting score file.
<SequenceMetric name="(&string;)" custom_type="(&string;)"
three_letter="(false &bool;)"
output_mode="(oneletter &SequenceMetric_output_modes;)"
residue_selector="(&string;)" />
Note that the three_letter
option has been deprecated in favour of the output_mode
option, which provides the options "oneletter", "threeletter", "basename", or "fullname". Examples of each are given below. Note that the distinctions are particularly important for noncanonicals: some noncanonicals, such as ornithine, don't have a separate three-letter code for the D-equivalent.
Output type | Example |
---|---|
oneletter | RSTLNEXXYYS |
threeletter | ARG,SER,THR,LEU,ASN,GLU,ORN,ORN,DTY,TYR,DSE |
basename | ARG,SER,THR,LEU,ASN,GLU,ORN,DORN,DTYR,TYR,DSER |
fullname | ARG:NtermProteinFull,SER,THR,LEU,ASN,GLU,ORN,DORN,DTYR,TYR,DSER:CtermProteinFull |