Autogenerated Tag Syntax Documentation:


Close loops using loophash library

<LoopHashLoopClosureMover name="(&string;)" loop_insert="(&string;)"
        loop_insert_rclrc="(&string;)" blueprint="(&string;)"
        loophash_db_path="(&string;)"
        loophash_ex_limit="(4 &non_negative_integer;)"
        quick_and_dirty="(true &bool;)" symmetry_definition="(&string;)"
        repeat_structure="(&integer;)" lh_filter_string="(&string;)"
        max_linear_chainbreak="(0.07 &real;)"
        num_trajectory="(1 &non_negative_integer;)"
        save_top="(1 &non_negative_integer;)" />
  • loop_insert: Instruction string in Between Chains format: e.g. "A6B7CDE" to insert a loop of size 6 between chain A and B and another of 7 between B and C loop_insert, loop_insert_rclrc, and blueprint are mutually exclusive options
  • loop_insert_rclrc: Instruction string in Residue:Chain:Length format: e.g. 25:A:6,50:B:7 for a loop of size 6 residues after 25 (and before 26, implicit) and another of size 7 residues between 50 and 51. loop_insert, loop_insert_rclrc, and blueprint are mutually exclusive options
  • blueprint: loop_insert, loop_insert_rclrc, and blueprint are mutually exclusive options
  • loophash_db_path: (REQUIRED) path to the loophash library
  • loophash_ex_limit: loop extension limit
  • quick_and_dirty: remodel quick and dirty?
  • symmetry_definition: The structure is symmetric. Specify symmetry definition. symmetry_definition and repeat_strucutre are mutually exclusive
  • repeat_structure: Number of times the structure should be repeated. symmetry_definition and repeat_strucutre are mutually exclusive
  • lh_filter_string: XSD XRW: TO DO
  • max_linear_chainbreak: XSD XRW: TO DO
  • num_trajectory: number of trajectories
  • save_top: keep top n scores