Autogenerated Tag Syntax Documentation:


Mover to perform full loop hash. (more explanation?)

<LoopHash name="(&string;)" min_bbrms="(0 &real;)" max_bbrms="(100000 &real;)"
        min_rms="(0.0 &real;)" max_rms="(4.0 &real;)"
        max_nstruct="(1000000 &positive_integer;)"
        max_radius="(4 &non_negative_integer;)"
        max_struct_per_radius="(10 &positive_integer;)" ideal="(false &bool;)"
        filter_by_phipsi="(1 &bool;)" sample_weight_const="(1.0 &real;)"
        start_pdb_num="(&residue_number;)"
        start_res_num="(&non_negative_integer;)"
        stop_pdb_num="(&residue_number;)"
        stop_res_num="(&non_negative_integer;)"
        loop_sizes="(&nnegative_int_cslist;)" db_path="(&string;)"
        nprefilter="(0 &non_negative_integer;)" prefilter_scorefxn="(&string;)"
        ncentroid="(0 &non_negative_integer;)"
        nfullatom="(&non_negative_integer;)"
        centroid_filter="(true_filter &string;)" ranking_cenfilter="(&string;)"
        relax_mover="(&string;)" batch_size="(32 &non_negative_integer;)"
        fullatom_filter="(true_filter &string;)" />
  • min_bbrms: Min backbone torsion angle rmsd for the loop window
  • max_bbrms: Min backbone torsion angle rmsd for the loop window
  • min_rms: Min Anstrom Rmsd cuttofs for loophash generated structures
  • max_rms: Max Anstrom Rmsd cuttofs for loophash generated structures
  • max_nstruct: Max models to create in loophash
  • max_radius: max loophash radius
  • max_struct_per_radius: For each radius in radius list, generate n structures.
  • ideal: Save space and assume structure is ideal?
  • filter_by_phipsi: Filter-out non-ideal phipsi.
  • sample_weight_const: sets the same sample weight throughout the pose
  • start_pdb_num: Residue number in PDB numbering (residue number + chain ID)
  • start_res_num: Residue number in Rosetta numbering (sequentially with the first residue in the pose being 1
  • stop_pdb_num: Residue number in PDB numbering (residue number + chain ID)
  • stop_res_num: Residue number in Rosetta numbering (sequentially with the first residue in the pose being 1
  • loop_sizes: (REQUIRED) Sizes of loops for loophash
  • db_path: path to DB -- if not specified then command-line flag is used
  • nprefilter: OSOLETE
  • prefilter_scorefxn: Score function for pre-filtering step.
  • ncentroid: number of structures to carry over to subsequent stages
  • nfullatom: number of structures to carry over to subsequent stages
  • centroid_filter: Filter after centroid stages.
  • ranking_cenfilter: Filter for ranking in centroid mode
  • relax_mover: Relax mover applied in batches
  • batch_size: batch relax batch size
  • fullatom_filter: uses the filter's report_sm method to rank and report the best decoys