Reply To: clustering_decoy

[Sally Ride]

Are you generating them in pdb or silent format?

> i am generated 3 x of 9999 decoy, did i need to merge them befor clustering analysis? if yes how?
> > hi..
> >
> > how to identify the best decoy according to clustering tree.
> > if my protein is 176 aa, how many decoy should i generate