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#3975
Anonymous

    Maybe you can change your native pdb to be different name as 1xxxa, 1xxxb, 1xxxc to avoid lose data during extracting silent files.

    > I would like to run rosetta and analyze its results as following:
    >
    > 1) Generate decoys in silent format with multiple rosetta runs (that is I have several *.out files)
    >
    > 2) Cluster all decoys together
    >
    > 3) Extract structures corresponding to the decoys from best clusters in pdb format
    >
    > Sounds easy but:
    >
    > * decoys in *.out files from different rosetta runs have the same numbers (in each silent file they start from S_1) so I cannot simply concatenate the files
    >
    > * I know rosetta -extract but I would need some simple custom script to get decoys corresponding to the best clusters.
    >
    > * I would like to rebuild full atom pdb files
    >
    > Has anybody good protocol for that?