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#3980
Anonymous

    You can use the extract.pl scripts in rosetta_scripts package to extract PDB from a silent mode file.

    > Hi,
    >
    > I am looking for the quickest way for __crude__ (re)constructing full atom decoys (backbone + side chains) from the silent format file.
    >
    > Lets say I have generated silent file using -silent rosetta flag and now I want to get all full atoms decoys in PDB format (with crude reconstruction of side chain).
    >
    > I have tried several approaches but: rosetta -extract gives only the backbone. -relax takes too long. -loops could work but requires additional input files.
    >
    > Is there any dedicated protocol?
    >
    >