Reply To: How to reconstruct full atom structure from silent file

[Anonymous]

You can use the extract.pl scripts in rosetta_scripts package to extract PDB from a silent mode file.

> Hi,
>
> I am looking for the quickest way for __crude__ (re)constructing full atom decoys (backbone + side chains) from the silent format file.
>
> Lets say I have generated silent file using -silent rosetta flag and now I want to get all full atoms decoys in PDB format (with crude reconstruction of side chain).
>
> I have tried several approaches but: rosetta -extract gives only the backbone. -relax takes too long. -loops could work but requires additional input files.
>
> Is there any dedicated protocol?
>
>